Table 2. Common Spatial Occupancy Group One (CASOG-1) tiling atoms.

  VP1 + VP2 + VP3 Internal
VP1-RES1 VP1-RES2 VP1-RES3
PDB Protein Res. Atom Res. Atom Res. Atom
1AYM HRV-A16 P 146 1162 P 182 1449 P 248 2047
1BBT FMDV P  90  703 P 118  912 P 188 1293
1BEV EV-G5-27 P 147 1024 P 183 1287 P 248 1827
1D4M EV-B-CV-A9 P 148 1170 P 184 1443 P 250 1984
1EAH EV-C-PV2 P 161 1046 P 197 1325 P 271 1897
1HXS EV-C-PV1-M P 161 1141 P 197 1425 P 271 2006
1OOP EV-B5-SVDV P 147 1072 P 183 1343 P 249 1871
1PIV EV-C-PV3-S P 161 1127 P 197 1406 P 272 2000
1TME TMEV-1 P 147 1147 P 188 1450 P 246 1912
1TMF TMEV-2 P 149 1164 P 190 1465 P 248 1927
1V9U HRV-A2 P 147 1047 P 183 1332 P 247 1857
1Z7S EV-C-CV-A21 P 156 1107 P 192 1393 P 266 1980
3VBH EVA-71-1 P 157 1188 P 193 1454 P 263 2032
4CEW EVA-71-2 P 157 1188 P 193 1454 P 263 2030
4Q4Y EV-C-CV-A24 P 163 1114 P 199 1396 P 273 1993
4WM7 EV-D68-4WM7 P 149 1079 P 185 1357 P 251 1850

Table 2 lists specific proline main chain oxygens in the VP1 proteins of a representative set of picornavirus VP1-VP2-VP3-VP4 structure assemblies (“VP1234”). For each structure, these atoms were superposed onto the listed 1BBT atoms. (1BBT was arbitrarily selected as a spatial reference frame.) The aligned picornavirus VP1234 structures are shown in Figure 4, Column 1. Proline residues listed are indicated by an “&” in the VP1 header in Figure 1 between sections: M-11 and I13-2; M14 Subsection 8 and Subsection 9; and A-1 Subsection 3 and Subsection 4.

Table 2

Weininger, A.; Weininger, S. (2016)

“Common Features in Picornaviruses, Alpha-bungarotoxin, Myelin P2, and CRABP Suggest
 Structural Bases for Multiple Sclerosis, Guillain-Barré Syndrome, and Paralysis Induction”

http://www.weiningerworks.com/picornavirus_monograph.html#Table2